Scaffold Ga0169724_100243

Overview

Basic Information

• Taxon OID: 3300014530
• Scaffold ID: Ga0169724_100243
• Source Dataset Name: Human fecal microbial communities from infant at 4 months in Denmark - 511_4M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 69026
• Total Scaffold Genes: 78
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (29.49%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Source Dataset Sampling Location

• Location Name: Denmark
• Coordinates
  • Lat. (^o): 55.678
  • Long. (^o): 12.531

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042095	Metagenome	159	N
F057001	Metagenome	137	Y
F058555	Metagenome	135	N
F064725	Metagenome	128	N
F083452	Metagenome	113	N
F089590	Metagenome	109	N
F089591	Metagenome	109	N
F089592	Metagenome	109	N
F093883	Metagenome	106	N
F102167	Metagenome	102	N
F106193	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0169724_10024314	F083452	GGAGG	MSGRVKIKIKDKKPKIDVFKVIESRFKNMNELRDLIGMDPRKGLVRIRDGAGFREVERGGCLHRNYLNLLEEELGAKLSIDLIERYIKR*
Ga0169724_10024317	F102167	N/A	MDINQIKTYLPSGWDVVDLIDYGIIDLDIMNEKMIGEYVAVLMIKSYDKITESHNLTTFSFHDKDMGGLRRLVSNAIMAVGLRNNPMTGDGNTAIK*
Ga0169724_10024332	F058555	N/A	METKVALLQKMKSNFDKILTEKYIPRNIQTKKDELGCVKLPAGSLICPVDFKPVTNKEGKKVTAIKYSLKHEEYHGSGIRISDECKMAMIYLIIINVLKHVFLRKRMQDGNRDQIEINTNDFIDILSDGCAYFCYRHVLRDSHEDINYQLISLKAWAEGEIRIALSDIIKYKHKASKVPRIKDMFVKKGESIYTCIDKNLDSDSRRRMANKSRKLDRVRILSKIIFRARTRNVHHIYKVTKRKTVKFNVAYLLNELNKKLIGIGMREISQSTIYRYISMFLDMCKKSISDLYDEVKKNNGVANTKDRKNVTIGCLRLLYKGKYMHILISTEYIRDVFLGEKSSEMSKAG*
Ga0169724_10024337	F093883	N/A	MEDKDIKTEIRDYLKEEADTHIRHWIAIKRESKRLYSDIEDRTKKIALKSSSLIKEEDFVVLHEMTHKIQMLNIEAVKVNSRLMFIIQLATSFGMDLDLDTTYASTAKSIIEDRTSGFVFYDDKERLRYADKELEDMFHDMSVTEVSKIGVVQSYELLMKQYNEFKDMKANATGKTKADE
Ga0169724_1002434	F057001	GAGG	MTNKELNKVQNEVKKSNEKTLTGAVKAWCNLFKSGKEINDILKENDIKVSKEVVPALVALAKDKEVVIQLCKEILPRVNSTFCSYKEVEREYYDKNDQDKNKKLKMNEIEDIAILGSSHKRFGYNEPIEFDFGIYYETFNGSDKRIVKCAVPIKRYTFSLIAKCITYYLTHPKNDR*
Ga0169724_10024343	F089592	N/A	MKEILKSKKVLVEVNGFNIMSDTLYEVVGKHDGSAPQAFQDANIAKAPFPENATHVCCPWDDFSEVYNTGFYPRSRCYNGMDKDEVDKLVDQRVNNIMKPFENISQKDLSQTNFEFWDDAKDKIYMGKVYNTANTVELFYLYLAVFSGMLTPQEMDGDPIFMNSMFCFIEKDNAKDFVQQREINKMNISYKFINALKRGGKERQAVIDLLLYIGIVTRTDFTEDDYYTGSLSNWMNEKKTNIDYLLDIWDRSLEGDFKEVLEFYRIVNVLQRNGRINMTPSGLQYNGQIIGPDTRTSAEFLATKKDLISVKANVLDEYEELMSISNIDDKTKTEKVKDVKKKEDVEGGDKVNTEE*
Ga0169724_10024344	F089591	AGG	MTMTIQEAYLRSLQKNEQNLANGGIKLDPGRFVLLFNEAQDRLIRYYLNRKDDETIRSIQTLLVYWKSLNKINHIDDPESTSFGLPDDYLWFSNIKGAFSYNGCEVGDFVMWEAKNENVHELLGDDNNRPSFDYRETFYTIGDGKVVVYEDGFRTDEVRMTYYRNPVRVDLAGYINAAGERSTDIDPELPDPLVEEILDMVAKQFNLNENELQRYRFDKDNVASFR*
Ga0169724_10024350	F042095	N/A	MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVGNPYNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGRDDYCIIFRSLAIQHRKNPNTTWWFRKEDGSQYVPIDNHAYADGRRDVQRAVSIDFTCYIYYANIQVCKMTSFPIVDIPGLEFLIVSHTLYVNDGIPVDKLSRSKKLIYIDLQNIGQRMTVIPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNLQTLELSSCYLDRYIKEFNDLPKLTSLKIHPGPSDMWNYFDINTLPSFEVDKINPNITDFYFLDDRVSGERRTGWNDDNMSGRGLEHLTSFIAVHSNSLRMDKLPDYIYEMRAITWFNVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYVAAHPTENRRPSGTEQAPEGFVKGSSNGSPATPMEKIYVLKNNYAQRWTIKPE*
Ga0169724_10024353	F089590	N/A	MKDKDMIERVGALWNIALAYGASCWAYFQPVHHLLTVLLIVLIANFLARLARSVSGWKLRRSRRRRFSFKRWFREVRFTDILKEFALSCFIVMTLCVIYKTLYPIEEEASMILTVTKYGVYIALVGYVMLFLNTIGDAFADAYLVKVFKAVFKRINVFKMFGFSKNIPDEMFDDIKKIADDKVKDKS*
Ga0169724_10024357	F106193	GAG	MMNHSSSTAVSDMEYASRSTAGCMVMQDPLQTMERDVVSIYKQVRTKGDGVGVSYLNMQKKIREWIKNLPYGCPPDEEVQEMRKEILDGRSKHIKP*
Ga0169724_10024373	F064725	GGA	MGLQTVEVFVIQLAREGRLDFFCITDSNTYLCAKDLNMTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAIVKTSNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITEKLYIGSHEVRFHYHHPVRLSIGRGLRRDCASDKYRDKYAWDNYDITISGNTMYTGFDGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLIQGAGDAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSYERMWPNAFDKYIKLV*