Scaffold Ga0182021_12381434

Overview

Basic Information

• Taxon OID: 3300014502
• Scaffold ID: Ga0182021_12381434
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 637
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Thermoanaerobacterales → Thermoanaerobacteraceae → Moorella group → Ammonifex → Ammonifex degensii (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051289	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182021_123814341	F051289	GGAG	MDGKVGKCLDVVDVERVLPVGTSQEKRLRFQWEQAPSEQFLMSWNQYMEPNSVFVEDVSTEGITVTVRWALMKETPEQIATRLNRWLEQVEEGKYRHSGISGRHL*