Scaffold Ga0182021_10739648

Overview

Basic Information

• Taxon OID: 3300014502
• Scaffold ID: Ga0182021_10739648
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1180
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002761	Metagenome / Metatranscriptome	531	Y
F005112	Metagenome / Metatranscriptome	411	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182021_107396481	F002761	N/A	GLGKLNELARFVGFKRSKPRESALRWINSHKVITLTATEVVNYSVHGVSSPLGVTFALGGTIVNVLMVAFVVPIWCRLSKLESRLS*
Ga0182021_107396484	F005112	AGGAG	MSLAVRYKLFWAACIAALCGLAFWKNSKSYPGKSKLWRLGKSAIDTGLVLLMVLYAPALLLMYVVIWLTSPFKNKIMQSTAAFASILAVSHLAGIVFEAVAVLGVFAVDLLTGQVVARMDRRNRKDVAKAA*