Scaffold Ga0182024_12015492

Overview

Basic Information

• Taxon OID: 3300014501
• Scaffold ID: Ga0182024_12015492
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 638
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003000	Metagenome / Metatranscriptome	514	Y
F069590	Metagenome / Metatranscriptome	123	Y
F083628	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182024_120154921	F083628	GAG	MTAENEYRLGRRAFHRNQEESIAVALAIVAVILLAGGSYILVNRFHVRSLQLLEGCLYAFFALVACI
Ga0182024_120154922	F003000	N/A	MKANAQLGKMHDRLIECYMQNPKERFCDALLRLVEDPLKPRDEDGRFRVNPILLLLTLVLALALGTFLLLSFVQS*
Ga0182024_120154923	F069590	N/A	VQTQLDRVTLEELGSAKELALPVAHAEAVADDLHPGETTQGVVSIRQGLKSPAVVQLVFGDGVKATVVL*