Scaffold Ga0182024_10681069

Overview

Basic Information

• Taxon OID: 3300014501
• Scaffold ID: Ga0182024_10681069
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1273
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013913	Metagenome	267	Y
F025336	Metagenome	202	Y
F054526	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182024_106810692	F054526	AGGAG	MSNPQQEVSTPDLIEQVIGSGLFSFDDEPRFTWQGCEHCADGLGATVYDLQGNRSLEDTESYDFQVCGTCINRLYYGTEEN*
Ga0182024_106810693	F013913	AGGAGG	VSLTPSTKGSFLAGIGLWCLIWASLFKADEIAQAGGFQRWVSSDRCLRWIRNHKSTSLIGTELCNYAHTGLDPLGVTFALGGTLVNMLVIYLLLPMLERTKRGGTALNLEL*
Ga0182024_106810694	F025336	N/A	MAFIALIAAAEAMLFSASGAKRNQVRRQRVLMGNSLDPKRCLPFVDDYLRRKTASASKVQVFVASKLTAVCRRAVHTRSFEYLLLHLIRTAFLKHRSKFLNTQRRVNL*