Scaffold Ga0182024_10107893

Overview

Basic Information

• Taxon OID: 3300014501
• Scaffold ID: Ga0182024_10107893
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4027
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013913	Metagenome	267	Y
F014639	Metagenome	261	Y
F020887	Metagenome	221	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182024_101078932	F014639	AGGAG	MMEITQFIHPPAPMGTGRLNFKWKILFYFHKRVFLSRIEGILNAAAGHESNALPSGNYQYQVLSARADELCTEFADRWGLDVDLLRARIPGLAKLAGLSVPPPAKNYARLACLGLLAIPLALFLLGIMAGLVSVGFHLAGGR*
Ga0182024_101078934	F013913	AGGAGG	MNLTPSMKGSFIAGIGLWLLLWAALFKADDIAELGGIKRWVNSERCFRWIREHKSTSLIGTEAVNYAHTGLDPLGVTFALGGTLTNFIVIYILLPMLNRAKRGSKILDLKF*
Ga0182024_101078935	F020887	AGGAG	MRTKITLYGEIAGTIWMPALECSKEFHLELTRIPRKSSTRTYPGIAPRSMEITCLRDALLHLTNDGDFQSCAISWARLEIWHYFEEETHGTRTVKVRTRVWDLRGQDENADCFA*