Scaffold Ga0182024_10098577

Overview

Basic Information

• Taxon OID: 3300014501
• Scaffold ID: Ga0182024_10098577
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4266
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036809	Metagenome	169	Y
F044611	Metagenome	154	Y
F077551	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182024_100985771	F036809	GGAGG	MTPKVCILNEDDARSFTYGGIAHKCSSRRHHHYGKSKVDALVKAGELVWLGKHKKVATFRNARSWIKTYSRNQYGEVITCGMQLVRGGGGF*
Ga0182024_100985773	F077551	AGGAG	MSDEPSPSEFLISKMEGMDDVIQVLIVTRTEEGEISYDSCGQIAADTLGMIEFVRVAAAEHLRRELYDEDVD*
Ga0182024_100985776	F044611	GGAGG	MVNDGSADVYAEIFAEVRDSSDLPHAIARAVRQLRAAMEKEDNCAVTAAHVRNLKEIDPAALATAYALAERTCTYWPTPGQIRELAGWSEESRSRAALQWVFTYLEKHGVEGRARGGGVRFGEDETGRRVLLESEVEIPAPAIPAEIGATLAALGSGAVKQGLRYVSQHPVAKGWDNFNGDAASRTAERIEAQWIRCSLHTMRKGRKIPGSVKPPTTPPHGGRNER*