Basic Information | |
---|---|
Taxon OID | 3300014501 Open in IMG/M |
Scaffold ID | Ga0182024_10065273 Open in IMG/M |
Source Dataset Name | Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 5572 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (77.78%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Sweden: Stordalen | |||||||
Coordinates | Lat. (o) | 68.35 | Long. (o) | 19.05 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000151 | Metagenome / Metatranscriptome | 1897 | Y |
F004611 | Metagenome / Metatranscriptome | 431 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0182024_100652733 | F000151 | GGAGG | MRYEVNGSNGAGVGTLSRNGDTHVQEVVKTAHEELRHLMHQRAEIMKRIGTLKQTISGLANLFGDDILGEDLLELVDRKTGGRQPGFTKACRMVLMEAGRPLAVREVCEQIQQRLPAVLLRHKDPLASVTTVLNRLVEYGEAMSVVRENGRRAWQWVSDPGSAGPANSAPLSRL* |
Ga0182024_100652738 | F004611 | N/A | MCRDNRTFETAAKALYKCEEALLVPESESNSRRWTVIASALLCCGLGLVVIYTKRSAFFSPLAVVVVAAIGLAAVLLQLRYYNREHSNPIHAPVWLNIVGVLFALTALFSDLLSLSWQIAELMALGAVGSFAISSAMILHAFRKRRAISK* |
⦗Top⦘ |