Scaffold Ga0182024_10051743

Overview

Basic Information

• Taxon OID: 3300014501
• Scaffold ID: Ga0182024_10051743
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6492
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013913	Metagenome	267	Y
F014639	Metagenome	261	Y
F025336	Metagenome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182024_100517433	F014639	AGGAG	MSEITQSTNAPISNETGFLNRKWKLFLFFFAKRAFESKLEGILRAAAGHEGNSLPPGEHQYQLLNVEADSLCTQFADRWGLDVDLLRARIPGLSKLAGLSVPPPTRSYARLACFGMVAIPLALFLMGAMAGLVNVGFHLVGGR*
Ga0182024_100517434	F025336	GGAGG	MALVALIAAAEAMLYSASRSKLGQTRRQQVLMGNTPDSVRALPLVDDYLKRMTAGASRVQTFVASKLAEVCRRAVHTRSFEYLVLHLIRTAIKRRSKYLNLQRRVTICK*
Ga0182024_100517435	F013913	N/A	MRGSLLAGIGLWVLVWAMLFKGDEIAKAGGFERWVSSDRCLRWIRNHKSTSLIGTELFNYAHTGLDPLGVTFALGGTLTNLLVIYILIPMLDRAKRGGKALNLQL*