Scaffold Ga0182024_10048067

Overview

Basic Information

• Taxon OID: 3300014501
• Scaffold ID: Ga0182024_10048067
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6825
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010633	Metagenome / Metatranscriptome	301	Y
F022470	Metagenome / Metatranscriptome	214	N
F045213	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182024_100480673	F022470	GGAGG	LLRFLKLALIFELSTILGLSVLTGQFFYRAYNNSSHEHLPVSFLAALVMLVLGTQQTAMSFRREKIRLAFGRPTVKEKLRLRVAYSTLTLLLFIAAGVLLVILQNHLR*
Ga0182024_100480677	F045213	N/A	MFAVGFFLLLFGILSQAYSLKTKRGVLPSKTRIWRVFTRMLFFLAGLLLMAMAVGRLVLHHGPTQH*
Ga0182024_100480678	F010633	AGGA	MTINWPNLAIGFVLGALLGVITDWQLGMRLRKWSERRALTKEYASLAGQYLNYRIRDDGTHEPTGGTVDIAWQPREGLLEASAFHATGNPEWHSYIRMSREYSGTGIGHYNNSNSIHGGIHHVIYSKQTRAFNVMGVSHSRTDFVHCWKLKQ*