Scaffold Ga0182024_10009808

Overview

Basic Information

• Taxon OID: 3300014501
• Scaffold ID: Ga0182024_10009808
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19703
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (68.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026322	Metagenome / Metatranscriptome	198	Y
F051307	Metagenome / Metatranscriptome	144	Y
F069114	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182024_1000980818	F051307	AGG	MATHPLHELGFEPLLPSLTDLGFEPAMAVGAKEPSSGRRIVQPTRNPAVNQTLATEAMPAYQARLGEIIRHIHGATLAASRKRKNPLRLAEKIKGEGQPAETVSDYGAAQIAVDSPQAKDAVVAAVKQHFKVLREQDHFAFGDPQYHYHAYSLQLQMPNGASEELQIVPRPVFEANREEHHDYKRARNAELAGHSAEPATAAARNLNDRAMERFNSKNGVHPSVVKGAVVKGSRVRLADGAVARVLYVDPNMRIARVRTEDGRNMTVRHRDLKRS*
Ga0182024_1000980820	F069114	GGA	MTDHQDDEASRLLKQIMSPAEAQSLVLPPPDHAPVSGPGESTPLTGNLAKPPSQATPSRQGLAGYFAGGSTAANDRGSDPLYIKVSSKGQVGYLPRANLLQAMQIDNNLKVLDER*
Ga0182024_1000980823	F026322	GGAG	MYSLYQQYLDLASGFHVIELRDERGNRHLVQLAVGHDACPACGAVHPKDNLGSLDPAAAVRQINEALNTSQQQMLVYAGKHGLTVK*