Scaffold Ga0182024_10003015

Overview

Basic Information

• Taxon OID: 3300014501
• Scaffold ID: Ga0182024_10003015
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40841
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (61.90%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017934	Metagenome / Metatranscriptome	238	Y
F074173	Metagenome	120	Y
F082600	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182024_1000301512	F082600	AGGAG	MTLAESTQHTIIIAFLLLTGCSHHVPQATVEVIDTSASITTRAEKSALVAIQNQIAHMQRGDRLVLIPVTGDEANDAGGRILRFSAPIERETYDADLHRFQEQARMQFAAWVASLDKHQSRTDIFGALDAAQQEFAVPPKDSNRRLIILSDFLEDDGTYRFVSAGSLTNPVRARELAARLRQQHGFTVPGAPLCLGRLESSDFAPLSAQRKEAIQAFWSAYFGAGGQLTEIRFDGTGILADAERGCGGGK*
Ga0182024_1000301515	F017934	AGGA	MNETNTEPQPRDLDEATRKRIIERAMAINTNLLARLATVADDLDVGGHRAALGGLDGIERQIDTMRSFLLLLP*
Ga0182024_1000301517	F074173	AGGAG	MTTEGGAEQRRVSGFENGAESAETLGFPHYPVGQRCPQHCPQATEALGEPLSILEVARVLGCSAWTVRHGYLPQGLPHFRSGPAGKLVFFHNQVVQWILQQQQKGGR*