Scaffold Ga0182024_10001306

Overview

Basic Information

• Taxon OID: 3300014501
• Scaffold ID: Ga0182024_10001306
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 64562
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (61.40%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045227	Metagenome / Metatranscriptome	153	Y
F092634	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182024_1000130627	F045227	N/A	MMKTRIAPLAVLLGSLFASFFTGASSLAQTASNTGGLQLTARITPTAARPEPVRQFTFYILSKSYEAVSKEVEAGDVIPPRDKFIDDLKVSPELKQWLKAHEILDLTMPGLDKALTADDVLHVPEFLLAYQRTNSGGVTNGIPKPKYKDADKTDHPDRYEKQKQEYYSALRKFIRLHPETMSGMELELDAVNPQRKWAKIESDHKKHVQHLAPDVAQSKYLVAKADTDLEGRAGVSGLPAGSYWVSSLNLDADAGDTRVRWDVPVAIQPGQTTRVELNNLNATDARAASAP*
Ga0182024_1000130652	F092634	GAGG	MSDFGNEGSFVILWAGENPSVHVNLLEKLEANGIACNDKVLGDDEVAPTSDPLPIDWKPRFGFEVTVLSTDYPAAKELLENLLQREPENLEIPAQPEVVDPSTTTPKANEAPATLLVWKGTDTKLAQFLTSALSENNLVARVANEPGFTAIYVAEGNQARALEIVREVTQGAPPK*