Scaffold Ga0182024_10000228

Overview

Basic Information

• Taxon OID: 3300014501
• Scaffold ID: Ga0182024_10000228
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 137393
• Total Scaffold Genes: 134
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 94 (70.15%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000737	Metagenome / Metatranscriptome	914	Y
F001385	Metagenome / Metatranscriptome	709	Y
F001499	Metagenome / Metatranscriptome	682	Y
F003314	Metagenome / Metatranscriptome	494	Y
F025234	Metagenome / Metatranscriptome	202	Y
F027271	Metagenome / Metatranscriptome	195	Y
F060162	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182024_100002283	F003314	N/A	MTTKTIPEYLEDERQKDRDAQLRMDEETARIQPLNHGHHRTAKQSNLDSASSVKAASKARKAAAAFRKKPRTARKTATKARKVA*
Ga0182024_1000022833	F027271	GGAG	MASDPQRVEQLAVAGSFCLFDKKLRSSGNSSIVWGALNLLIGGAVLACNNSLGVVSLLLGLALVVAGVYERRVRDPKVIILSAATLAGLALWNFALIGLAAMGKVHLALGGRTLFWAIAQAYGACVTWKTYSTYKMLREKSDPLTVQPVREYIDELRNSKPEQSVDLVQFDVNSGFVQGTKQYRLKPIEDLYLAARYKSQFGSLQLEEVGFVPRNEVMLTPEGEKWMSKKIKATVQLGPLKLDKVTITPEMAARISPAARLMSFGT*
Ga0182024_1000022847	F060162	AGG	MTENRTWRELYQAALLELRPEELGQRIAAAEKAIQQPMPDLKRNDSSSGEKLQELGDALRGLRVLATTECRVPSSTAPGLS*
Ga0182024_1000022873	F001385	N/A	MTDNPAKPVPSGVRAIAALFALCGIYLGIAGGLMLIRPGTISMAAGAPLLFGLELAGPYMFLLMAIVAGGVALGLVKLNNIARHAALLIAIAGIVMLVPSVSAATVMVQPKPLAFGGLGIIVRVIVAWYLSRGEIADQFKARTT*
Ga0182024_1000022882	F000737	GGGGG	MPSTITMQKEHRGSRVKLGGSILALVLLENGRQIRARMNQLSVNGGLVALKLPLDEGISATVLFHLGCTSIRCPAKMLFPMWATQGCLQPFRFLDLPAASRASLNRELEDLVRHGASAEEEGSE*
Ga0182024_1000022884	F001499	AGGAG	VEHIDAAVTNRFDTRSGRPCEFCRDLDPQFPHRRPLDQMVAGSRKPRASAHLTEDGYVRHRMLELRRLTSRVALTAA*
Ga0182024_1000022890	F025234	AGGAGG	MRRSDLMKRDDLMKADLPSEIVLLGSGVAILVTLAMVVLAALTSAATA*