NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182012_10157419

Scaffold Ga0182012_10157419


Overview

Basic Information
Taxon OID3300014499 Open in IMG/M
Scaffold IDGa0182012_10157419 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 612S2S metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1632
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036809Metagenome169Y
F077551Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0182012_101574191F036809GGAGGMPSPIVCILNEDDARSLTTWGIAHKCSSRRHHHYSKSEADALVKAGELMWLGKHKKIATFKNARSWVKTYTRNRYGEVITCGMQLVRGGGG
Ga0182012_101574193F077551N/AEFLISKMEGMDDVTQVLIVTRTDEGEISYDSCGQIAADTLGMIEFVRVAAAEHLRRELYDEDVD*

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