Scaffold Ga0182012_10025816

Overview

Basic Information

• Taxon OID: 3300014499
• Scaffold ID: Ga0182012_10025816
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 612S2S metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5129
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005865	Metagenome	388	Y
F009563	Metagenome / Metatranscriptome	316	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182012_100258166	F009563	GGAGG	MKCQCVVGLSFSYTGAVFQVELIASGLSLSTESQSNAADKRLLDILRQGLATEFPNPDRIGCPGNALLRGIAQGKVSFTEAEPWLDHLGSCSPCFQEFKEFRSQSAILRRRVLTWAAASAAVLLFAVGGWLWVRARHSVESTETAVLDLRERSVARGQNPSDTGQAPLEIPRTAKHLVLDLPIGSKEGPYDVGLITNTGDELLRATGTAELRDHITRLRVDVDLSSVRPGAYSLGIRQAGLEWSRYPIRLF*
Ga0182012_100258167	F005865	GAGG	MPAPEPGPEWVLSGVTPRPDSATESELLKAARSAWPKALAHVRQVQSQNPFNDDGLLVAEVWENVLQSVSMTLDRMNGRRSEIGDLEAYLLGSFYHRLNRALKKEQRREEAIRLVSSVEELEVLGAANQAEQQNIESTLHAQEILDRMDAWSRKVWVAREYGYTWKHIGRVLGIPGDSVMLRFRRRMKILRARLSGGR*