Scaffold Ga0182008_10051351

Overview

Basic Information

• Taxon OID: 3300014497
• Scaffold ID: Ga0182008_10051351
• Source Dataset Name: Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2045
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Sorghum-Associated Microbial Communities From Plants Grown In Nebraska, Usa

Source Dataset Sampling Location

• Location Name: USA: Nebraska
• Coordinates
  • Lat. (^o): 41.1591
  • Long. (^o): -96.4086

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032020	Metagenome / Metatranscriptome	181	Y
F062087	Metagenome / Metatranscriptome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182008_100513513	F062087	N/A	VTTTEQYRARIKVLGLTPIGRASAGKYQIHRALRGRVYSIRDPDDLTEAERKEMIEYYEQQFSLE*
Ga0182008_100513514	F032020	AGGA	MLRSIEFDIVVVRGGVGLIHARSRQMRSLMLMGRSEDELWRDMDSVLRDLLDIQGDKVVAMTIDRPRRRVRVDVE*