Basic Information | |
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Taxon OID | 3300014496 Open in IMG/M |
Scaffold ID | Ga0182011_10468657 Open in IMG/M |
Source Dataset Name | Permafrost microbial communities from Stordalen Mire, Sweden - 711E1D metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 814 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Sweden: Stordalen | |||||||
Coordinates | Lat. (o) | 68.35 | Long. (o) | 19.05 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000335 | Metagenome / Metatranscriptome | 1276 | Y |
F001997 | Metagenome / Metatranscriptome | 607 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0182011_104686571 | F001997 | N/A | VAVRSPSVRQLVMLYSEATGQKMPLSATMPYAGSVVEQGGKLYQQASYQDGQAHAYASNIPTLGGIAAGTYPTPGGPNTAGGSGATYLSLNISGNDAANFMTGQFVTPQFVTDQAMAAQYSSYGRTQQSANMQLPGLTVA* |
Ga0182011_104686572 | F000335 | N/A | MPASLCTAFVEVREFVQLQNQYHDGTIQRSQLAQTSRRTFRLSKRLSASVLSALYGFWVSQNAGLTPFAFYNPFDVASGQQIGSNYDPTGNNTQGRVTVAFRGNWAQATDIARTN |
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