NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182011_10038570

Scaffold Ga0182011_10038570


Overview

Basic Information
Taxon OID3300014496 Open in IMG/M
Scaffold IDGa0182011_10038570 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 711E1D metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3413
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038201Metagenome / Metatranscriptome166N
F045645Metagenome152N
F051827Metagenome143N
F063278Metagenome129N

Sequences

Protein IDFamilyRBSSequence
Ga0182011_100385701F051827N/AQIYLVQNCGGVSLEVVGGPFDPEAAVEIEEAIIQRVKADSGLRHGGDDTLHTLEIAPDRKPEFSGFSGGYMENIRWVAAGCPFQGKPDTWDQPDFALTTKEKGKGKALPSDFTTAKTAPKPVLP*
Ga0182011_100385703F038201N/AMKPGSRSATGPVRMDVFTRNVQFMAGQVAGEHAAQTFQMLQATFPGLRNFEQLRAFARLYVSTGLKPLQFRPLPSDVDPQRLKGELALRFHNGMIVLAPDERIVCRGADAYGPFDPVRAARFSRQLSAESPTNDDQGHTLDPEACAPTAVGMFPLDLS*
Ga0182011_100385704F045645GGAVKLQETTLKTLKYVAGVYAVRPIIRGKALALRQGRDGHELAQDEGQAVRVVAVSDAKPSLLSFAAINGIPVKNYTDMAAPKPRVPSAPKPAEVPELVM*
Ga0182011_100385705F063278N/AMKERYLIIGLQPATQRISLDSEWAESATGAMTAVAAIRKAADVLLAWTPGQMRQMADLLTAMTPQQIAFNRRSAELEERAFRASQMAPPQVHTGGPQNQRFLVISYNPVTEAVHLDTELSDRPDAALSSVAGIRGLAHVLLAFTPEQLREMAANLEGCTAEQIGRNRRAAEQEEQIFYAELTTRQ*
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