Scaffold Ga0182011_10029132

Overview

Basic Information

• Taxon OID: 3300014496
• Scaffold ID: Ga0182011_10029132
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 711E1D metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3978
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005296	Metagenome	405	Y
F012316	Metagenome	281	Y
F104257	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182011_100291321	F104257	N/A	LATALLDRYPVDDAILRIIAELTYWWRAQFDSARKQFGGTIPPETFQRAAYGYSSLMEVELPDGKIKLEEIHQPGLIDLYTNQFSVSGTVFSVSGSPWSVETRRKIGIHLANTRYTDDREPRLDDNGFTMSVSDGILINEILHDILDAEEEMGLTGQVEFIDLNGYARKKLASGDKMLVKAKGGHIFHLSNGRELSQQPNATIPDGSYMMSDRGIIRVADAVPELKSNFKSQHVAALAACGFEFDEDSGL*
Ga0182011_100291326	F012316	AGAAG	MPVSPRLLSLFEGEGNMSTTIIDQSAGPMHRCGKVWEGLRSLGTRGIITVNLWRRHQDQNALERSLARIIETANGHRAKGLPKGSPAYIVLRETADARIQVFAMKWGVDIAIIKAQAPALADLDSLCVPDTQIPAGLKLLAVLLGTILSLVLLGAASGLVHVGHDWVMRFAGR*
Ga0182011_100291327	F005296	GGAG	MAPWLLWFLPSFEAGFWSALIAGKLRDRGKTRELLVYGSRSRTSLPLIDERLRKAAGTPTKSQAFVAGRIAAGLRWLANTRAMDYAILLGLRRIWPKGQTISTEVKMCL*