Basic Information | |
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Taxon OID | 3300014495 Open in IMG/M |
Scaffold ID | Ga0182015_10028006 Open in IMG/M |
Source Dataset Name | Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4411 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Sweden: Stordalen | |||||||
Coordinates | Lat. (o) | 68.35 | Long. (o) | 19.05 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F021139 | Metagenome / Metatranscriptome | 220 | Y |
F026322 | Metagenome / Metatranscriptome | 198 | Y |
F069114 | Metagenome / Metatranscriptome | 124 | Y |
F075524 | Metagenome / Metatranscriptome | 118 | N |
Protein ID | Family | RBS | Sequence |
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Ga0182015_100280061 | F075524 | N/A | IGIPVGNATVPNQTLTMNYMEGLSGPIHFSQYAGREVAMGAARKWSLDDIAGAVAIRCERQLPANASSFGALRQSQVLIGSSAPDGTVQMIATGIYNDNGSGIECQYETTSTQDLMEVSMLGGVSINALGEGSMTVSVMVARNSTDSPQPANAEVKLAPFPLTPQNWRGYDGGARGQNERFRMRFTNGSMANAWFALKYCSLFTRPLFTGRTSNGA* |
Ga0182015_100280063 | F026322 | GGAG | MYSLHQQYLDLASGFHVIELRDERGNRHLVQLAVGHDACPACGAVHPKDNLGSLDPAAAVRQINQALNTSQQQMLVYAGKHGLTVK* |
Ga0182015_100280064 | F021139 | N/A | MKRIELRQATRDDWPRIQQLHREHQAAQGTNYELPWLFGPAIAIALVGVEETGTIRNCIYVETIAELRFVGCDPKATAFSRREIEGLSYVLKLQGFRWLECFVPRQLKKMIQKPLQRAGFDCVDRELAHFAKDLRGKI* |
Ga0182015_100280066 | F069114 | GGA | MTDHQDDEASRLLKQIMSPAEAQSLVLPPPDHAPVSGPGESTPLTGNLAKPPSQATPSRQGLAGYFAGGSTAANDRGSDPLYIKVSSKGQVGYLPRANLLQAMQIDNNLKVLDEG* |
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