Scaffold Ga0182015_10003990

Overview

Basic Information

• Taxon OID: 3300014495
• Scaffold ID: Ga0182015_10003990
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16172
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006431	Metagenome / Metatranscriptome	373	Y
F025166	Metagenome / Metatranscriptome	203	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182015_1000399011	F006431	AGGAG	MSTLHNVSAEDLAKVFHHYHEALENDFHGHATRQADFSWEHAPQNERKLMIAAARLTLLELAATSEIRQANRQYFATPGEADWGC*
Ga0182015_100039904	F025166	AGGAG	MKILRYVTFLSILAMLSPLGLYARDNNQHSVDIPSTVQVGGTQLEPGHYKVEWQGAGPDTQVTFLRYGKTVATVPATLKTNDNQVTQDDIVTDSTNKTLREIDFHHDKEALVFQQSGM*