Scaffold Ga0182015_10000714

Overview

Basic Information

• Taxon OID: 3300014495
• Scaffold ID: Ga0182015_10000714
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 46751
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (82.86%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032128	Metagenome	180	N
F042691	Metagenome	157	N
F042703	Metagenome / Metatranscriptome	157	N
F044277	Metagenome	154	N
F052342	Metagenome	142	N
F056265	Metagenome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182015_1000071410	F032128	GGAG	MSSLIVMPGSEEFKKTLASIAKAPSRRKLVEPVDLVGHTLMLNTALVKTFQCGGFVLGPNRPIGIVDEQSQQIPIRKALEEKKLIDVTGKDMATKGFKGTGGQTSAITEEDTGKKVFVGRDRRGNLYIATPRSKTEAKRFEREIRTTGTLKSVDFETEMTGLCAITEEVIESSEQPVKKPAKKSAKKAKKNVRTRRTSGNAVRSRN*
Ga0182015_1000071419	F044277	GAG	MQNLIFHISLPKGIKLVNGATLMKDVTFDFISQITPYYSTIDMVRLAAGPTLKKLSDITIACQIYRSSNEADLITAARVPLSGLQHTRLIGSRLQYVTALASRDLMLNVVSLLGPGAHVLANFSVDRKADNKQRLAEFEESLKLYEVVLRSGGRVMPGGRPDFHFAAKGVLDWAERTPARTWFANGMGANASSMDPGSPTGGRGKPIKFFASPTCSPPMSSMRIGVYQPGFPVSQFYPYAMGQ*
Ga0182015_100007142	F056265	GGTGG	MANGDPQDNIAASVAASYDMPIAVSVIEKLSKFPFLQQLGYNGQLNWLKGGFLGLQDFFDEMTTYSSAADILQIAWQLIQPRVLLNLDVQKNLYTTDSMGTVGNAFQQLVGFQQTFAVNPDDLSDSTGSAVVANNLPSS*
Ga0182015_1000071425	F042691	N/A	MAPTASSNAVQKPPAPGSATPAAANAQNTPGGIVIPSLAPSYEWIYPNSTDGKYFTATQAQMYIGNLFIDELVNLQFAYQGNRIPMFGYCSRSADAFGTGRLLVQGQIAINFVTEGYLYTVLKEFSKIYTQPVQASATGQAGAQIASLVQQSQQITNAMQGALSPSATASYQAQLNIISQQIQSLATQGGPDAINAAKQSATVQSDTPNAIVLNIPFDIHCELTGAGRTVERVLRNCLLISNEQVYDQSGQTLLDCYGFVARSAN*
Ga0182015_1000071427	F052342	AGGAG	MQVFFARWPSGRKVKWRSLTWAEFKKFDRQLDYDCPASVYCDVYRAVVLDGPALDGDPVYQAPAGLVEWIARALLDSNPFNGEYKDVKRALEMKRIELKSSWLNSAKSIIAGIFRYTFEEIEQWDAEMFFERLASAEFVSGRKLEPGDPDKLDAQHPGKKPGHPEGPPKPAKRELSPAQQKVVNRVVNSRK*
Ga0182015_1000071433	F042703	GAG	MKPDTSTPNPVHLAIVSPCSSCQNQLTVSHNGMPACPRRVAQQNIQFMQIAGIDTTGVQHLALYGTEGAAQSGNGSYLNPVYSDNLHAILIWIALLEDNGGVLDSQGNQLCPNLLDPSFNTSYIQCHSLPVTTRDNEAVYFQKGAFAANDQLEVTLSARQQMTTDGSALPVLIDGFAQKVNFIFNHPRTPLNKDLCPAGT*