Scaffold Ga0182015_10000310

Overview

Basic Information

• Taxon OID: 3300014495
• Scaffold ID: Ga0182015_10000310
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 69526
• Total Scaffold Genes: 69
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (65.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004330	Metagenome / Metatranscriptome	443	Y
F049124	Metagenome / Metatranscriptome	147	Y
F091723	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182015_1000031011	F004330	GGA	MNAQEDEHAKLVGDRSTAAGKTARVLLAAFSRPPQARGEDVNASILIAAESAEAYPGLKEAAQYFEPVTAVAQAQGFEVINEPYEFVLGPKTVARSDFQKDVGTRVMWQSTLVVLVRGYAVSFTFIGGTEDEVEELVEGLRFGVEKPRPH*
Ga0182015_1000031023	F091723	N/A	LPGRRGYAGETVELAHHLDGMLRVYRGDQLLLALPLPHEEHAQRRPKLLTSAQKRKATLPRIYNLSGRPALAAVT*
Ga0182015_1000031036	F049124	N/A	MERPTSVTVIAALFFLVAAYLITMGIIEFVAPGTASMTLRTGVTYGRELTGPQTALSVGAGWALVSWGLYRLRNWARWCAIVLMVIGIAGSVPAVSAAARDLTWRFFLYGAQIMVRVVITWYLAASPELIEAFANR*