Scaffold Ga0182015_10000210

Overview

Basic Information

• Taxon OID: 3300014495
• Scaffold ID: Ga0182015_10000210
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 84329
• Total Scaffold Genes: 89
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 51 (57.30%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000188	Metagenome / Metatranscriptome	1692	Y
F000512	Metagenome / Metatranscriptome	1064	Y
F000696	Metagenome / Metatranscriptome	931	Y
F000703	Metagenome / Metatranscriptome	928	Y
F000781	Metagenome / Metatranscriptome	895	Y
F000885	Metagenome / Metatranscriptome	849	Y
F001619	Metagenome / Metatranscriptome	662	Y
F001959	Metagenome / Metatranscriptome	611	Y
F006758	Metagenome / Metatranscriptome	365	Y
F085961	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182015_1000021034	F085961	AGGAG	VTRYKTQPPWDFLLSASRNSLQSYELTRLSHAANLRKEIGTLLDQWLDENACAMLARWLLEHRERFSARAADNLSPSASQSGAHSVSDNFLTDQALPPPVPSGYS*
Ga0182015_1000021037	F000188	GGAG	MSVKPELAFDVCWEVYRGAREVLETKRGISALNWKDTGKFLWKPDYRPRLNEWVADFALAGQAALEGPDWASRMILFRTYYLGVAPYETARHFMGLSERSWVNWTEQIRRRCGEELLRRKMFPPKKYFSGGE*
Ga0182015_1000021042	F000885	AGGAG	MATALATAARLQFIGIVLEIGGVAALAGGLILSLHHWPAAAALIGGGTAFFVGKKFRAQ*
Ga0182015_1000021044	F001619	GGA	MKAFLQKVLRGRYVELLEEEVARLRAENRALTNSLLGTAGFPPVDYPEPLKPVALSRLRKRSWHQIQMQREQGAGREAALDADERKNGFVPHN*
Ga0182015_1000021048	F000512	N/A	MKDKCRGRIEIVRETHETPEAVLERLKLAGGLNRFGQAHYRAVWGWNRLAWIGGKFEERDPSSGSLLREVVELRQEPKYPAVNRWHLERWMPPESYGSRRAWYAQTLEIADGQSVPALGPYPERGDYEHCFTLEGPHGEFVQLTATVAEHIARAIEWSRNKSRAARREAVGERTAREERAYDEHAFAILDDTVPAFHAQPFVCVG*
Ga0182015_1000021050	F000696	AGGA	MPVVGSSAYNTAGQITALVRSLLNDAQGNLFTDTVLLPYANSAYRKLQRALGNAGGGGFIQDDALLVVTAVAEADPSLQVSITDATAPPNQLPTDLLVPLKLWERANLSSDEFAEMTDLTRHGGLPSRDQDVCLSVWEWRADGLYFLGATQDTQIRLRYAKAYPDFTDATSPVLIRNAQEAIAYATAALAGWARGSPLAQRWDDAASDAIEDVIVAAVRREQQSSHRRRPFSARSGYTPF
Ga0182015_1000021053	F006758	GAGG	MSLAIASQNETVWLVNISPEKWPPRSRSYFGSLEVRSPEAGEPYAVTLIRGCTGYIDMGDRRNMEYRVTAREIAEDIAREINGDSGEGSFHGVFVASSATPSAAELTEAKRKLQEFQRRLVAAADLEWERSKNPMFITDLERRGTWARRNRGCTIRSRWESAHCARRKSRME*
Ga0182015_1000021056	F000781	AGG	MLTVAQLAPLKSRDPYLYETLTKVVAAVNTTSQQAGVDPSTPAPAPTAIASVKVQAANGWFDISISDPSDSRPGLFYFAESDTTPGFSSPRVYFMGASRNFYGQLGNQALYWRAYSQYVGSLPSTPVTFGSPATAVVGGGTSGPAPLPSSGSGALPNGVVRGGNGFGLHPGARVTKTTTL
Ga0182015_1000021057	F000703	N/A	VLLPKISVAIREYKEQDLGALRAIHARQGFEYALPDLNNPLFLTKIVLAETSPENQPGKIVGAALLRLTAEAYLLLDPKWGTPRERWQALLTLHAAAERDAWRRGLEDVHAWLPPGLEKKFGKRIERLGWLRDDKWTPYCRRLTE*
Ga0182015_1000021078	F001959	GGAGG	MKNLDSIFAAYLIAWGIFFAYYLSVARRAAALHEDIERLKNSLHRGK*