Scaffold Ga0182015_10000105

Overview

Basic Information

• Taxon OID: 3300014495
• Scaffold ID: Ga0182015_10000105
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 114276
• Total Scaffold Genes: 139
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 91 (65.47%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000789	Metagenome / Metatranscriptome	891	Y
F001450	Metagenome / Metatranscriptome	692	Y
F002623	Metagenome / Metatranscriptome	542	Y
F006668	Metagenome / Metatranscriptome	367	Y
F010701	Metagenome / Metatranscriptome	300	Y
F060173	Metagenome / Metatranscriptome	133	Y
F061100	Metagenome / Metatranscriptome	132	Y
F094188	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182015_10000105102	F001450	N/A	VQGRATRAGGVNRYGEPNFRVVWGGSRLAWIGGRWTDRDAHGNTIREKVELRRVPKYLPVDRWHIERWMPAESYGSPEQWHAQTTEIEDGIRVAALGPYPSRGDYEHCFTLESAGGEFIPLSPAACDWIVRAIEWSRRQLRMEMRGAIAAREARRERHVDRGMDDILDDAVPAFHSQPFVSV*
Ga0182015_10000105111	F060173	N/A	MTGKCYYIATLGAWRRHATRFVNSHWVTLNETAPAAMTDEPVSEDATSIIVLVEADEGAHLALEDDGAFEALPHPLAQKPISQSARAALVSHNVPYGATTFDVAEAVGRAHPLLRHRVF*
Ga0182015_10000105115	F002623	N/A	MLVREYKESDLDALRRMHAQQGFDYAFPDLAEPLFVSKLVVEDDEGHTVMASLARLTCEMYLLLAPGEGKPLERYERLLALHRTGEQDLVARGLHDAHAWLPPPIAKKFGRRLTALGWVRDDKWTPYCRRFVL*
Ga0182015_1000010532	F061100	AGGAG	MKSASIFLLLPLACASLAVSSIAQQQRPLSTPEWRQTQMTDSVRGQYTRYTLAGKFQQAPAGDSTNRPALVVDCGTYNRSHKSKFFRGTLVVGDPLKIDWVEPEQIEGISYFPKVDVVYRLNDAKEDKEQWTPSTDKTSASFSKSSLEKMLRAHTVEITAQDKNGSPIVMQFDLPDPAPLEQGCEVEPHK*
Ga0182015_1000010535	F000789	AGGAGG	MAVRTSFSDVRTEQSKLAESWKSEGRLSEAWVIADPEIVEIFSAGVAFGLEAGRRGRSDPAFSPDEWRKALREAMEHAAAIESKLEKAKDELQTK*
Ga0182015_1000010541	F010701	GAGG	MPFLLLGLVSIGWAGYSLITGKGYYKGCPPGGYDRSEHPVYYWAPTLIILAIGICMLLVFFGVIPLPSRPLGR*
Ga0182015_100001059	F006668	GGA	MPAEQNYNSLDGKQRQELLLKVGETREEARVLSRRDYAALGGWVKIRLKRNFKHPKS*
Ga0182015_1000010596	F094188	GAGG	MRVQKFALLGMFLAAAVCAAPTALAQNCASSKDAAIKCFVANAVTTKLIEPRYGMTLPQFQAYGVAVSGILQTNHTYLVLIGISSAIADAIPPRNLDGSVNQSAQDLAVTQIVDAVIAGGFAPTPANVTAQDLEWFTLDLVSAMNHNDGMMQMMTPGVGLRIIDSYVVTGTSNGSVNWPQVNASLTNAVQSFITAGLMKIPPNQTAVQVETFVNSVAQAIYAYKVSTNRAAL*