Scaffold Ga0182015_10000064

Overview

Basic Information

• Taxon OID: 3300014495
• Scaffold ID: Ga0182015_10000064
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 137777
• Total Scaffold Genes: 125
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 85 (68.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002591	Metagenome / Metatranscriptome	545	Y
F053411	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182015_10000064106	F053411	AGGA	MHIGRVLEISMKMLVAAFFVLGGGLLCSATAQGTSTSPEQPKFKIEIRASGEKGQGPSFVITNLTAKTVTACVFEQSYPSQGARKTTIVWDALVQGNSPVEPGQTVTRPLMPVIGNAVPNKVEVIAGIWADGESFGAPKWASDIFNNRALRASQYEDAAAILQRGLDQNWNRDQYQQAFSDKPDSGPMYIVRSALTATQQTGQTPEEFTHTMQFLLQTFKEQAEHLRKSIPR*
Ga0182015_1000006413	F002591	AGGTGG	MKLRIWTALLLFGMAQSGWGQTSGRSRLGSEGTIAPEPFTNSYTVLGATAQQERLVRAQMGAMQPEVLPLRIIFVPHWKYIDATRIFHLRVPSGYTSTMFTHLPSRTVFIDSDRYVSDDFLGYRLAHELGHLASNSVSESDAERAAHRFRKRLKDAR*