Scaffold Ga0182017_10080525

Overview

Basic Information

• Taxon OID: 3300014494
• Scaffold ID: Ga0182017_10080525
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 712E3D metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2143
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta steineri (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036061	Metagenome	170	N
F064338	Metagenome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182017_100805251	F064338	GGAGG	MATPGLIPIPEDLALFPVPTENVNGLLATSEDLGLTVEEKQELDNYQSALRILGPAAGAVLMCPGNQENVADEDKCPYSSKCPLLRMHKAPADKMCPVERLIVEERFNAWCRELSTDPVLAKESDRVAISDLCWIDLQMQRSLHILSKGDEARLTVTNPKDVHPETFLPISWEKVIHPNVELLVTLQTQRRMILKDWMLTP
Ga0182017_100805254	F036061	N/A	ADLFSDPPFGQLFAELTDLAAATAAGFRTVLVPPDTPLFCFYCHDTEAPEYRLRRKAGKYVALCHRPGTIEGCWDRDVAPMCEYKNHEAVQCDQVAEWVVAFGKDMLMRTHRCLIHVPPALSDVSEHRVFPI*