Scaffold Ga0182017_10007561

Overview

Basic Information

• Taxon OID: 3300014494
• Scaffold ID: Ga0182017_10007561
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 712E3D metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7906
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010591	Metagenome / Metatranscriptome	301	Y
F086490	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182017_100075616	F010591	N/A	MKTENEDIPVMLDCLHELFEEYGDAVTPTLLVERMETKLHRHVRMHVVAHQYTSLGFVTKRLNAQQKYNIIPNLELLAEIRAQYLKVKKAN*
Ga0182017_100075617	F086490	AGGAG	LSALTSYRHQIQAGDIAVILDSLQELFRERGEAVTPKQLADRMEHKSNRRVHYTYATYLCTLLGFVTRNGTDVGDKDNRYIVFDSGLLAQKRAQYCEMPEEPNVMENNGLVSE*