Scaffold Ga0182017_10000458

Overview

Basic Information

• Taxon OID: 3300014494
• Scaffold ID: Ga0182017_10000458
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 712E3D metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32125
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (82.35%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041733	Metagenome / Metatranscriptome	159	Y
F045057	Metagenome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182017_1000045813	F045057	GGAGG	MQETSIRKSLTATQWDRIFYGCPGAWAGNKPEPNQAGTVVIDGGNILAAAQYLNRQRLRVLYAKAPLPGIWCSDDGIILGIGLRR*
Ga0182017_1000045814	F041733	AGGAGG	MFAIKPDGKKKITLTDLLICGVLGAAWLPLGIVAAAGIGGYKYWQSQTEKWTEEHRRNHPEEVKELKV*