Scaffold Ga0182017_10000315

Overview

Basic Information

• Taxon OID: 3300014494
• Scaffold ID: Ga0182017_10000315
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 712E3D metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37728
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (47.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022249	Metagenome / Metatranscriptome	215	Y
F028046	Metagenome	193	Y
F050334	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182017_1000031523	F028046	GGA	MKLKILLFIAGAAMVGGSITVLVIQTNARKVKFQPTPENQLPTAISNYSKTFKLNMSPPIWRQPTNGNTTN*
Ga0182017_100003157	F050334	N/A	MEFLVIMGIGTLVAIWIVANLPKSHGLHREINLFEQKPSQIPTSRKSMSEVYSTDDFDYLRKLNRHKKDPQHWPFPFPPERHPNRL*
Ga0182017_100003159	F022249	GGAG	MLKRNGEDCEHPVPNYPGLLTASEYKAYNVAVPLVAEQVRLFNERANTLSEIEKQSAQIAEQVAAQSTHGLQSLTVLGTPKNTWQVRQTLCKSPRGEMLLCSRDVGEKKQFGIVEKFDPNSPYARVHGDSDLQITGNNAFVLLQNYVESERVVLQLFRKDIEATVEENLLEKFPGQNHSRVVRAISARCENQVPVESEKAKPAKSVKIRI*