Scaffold Ga0182017_10000012

Overview

Basic Information

• Taxon OID: 3300014494
• Scaffold ID: Ga0182017_10000012
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 712E3D metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 133486
• Total Scaffold Genes: 120
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 88 (73.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000043	Metagenome / Metatranscriptome	3655	Y
F003145	Metagenome / Metatranscriptome	505	Y
F070797	Metagenome	122	Y
F102355	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182017_10000012100	F003145	GAGG	MLLKEVYLDQVVGEVEDLAARVAQLKGRFAKQKVSVKLEHYWELEYVRTSFAEFKRRIADLEDADDAQLAKFQEAVEAAWKDLIHAVDTLLAALP*
Ga0182017_1000001251	F102355	GGAG	MASYSHFLGRKVTVQYRAGDILVPASGTFVADSGRSIFLEQHIEQRGKRSYFRWEIPYGYIHRIEEVSEPQPDAAAEPAPELPDRLAAAAGAAQAPPETPSILRLPRRPKTA*
Ga0182017_1000001252	F070797	AGGAG	MGNHVCPLCFAKVPRTLILTKTLEVNCPACHAELEVSRGSRVLASFVGILAAFVAVHLGGQASGTAGWTLPIVAAVVSFGVCSALVLILFSELAVRPKISPTAFPHIHA*
Ga0182017_1000001278	F000043	GGA	VIYQIGWTTLPGLHGLNVSEFRATPTATPDNERGVALNFADDEERDSFLRLIEAEFAARRFTNAADAFDSVKAYVLDRASKRV*