Scaffold Ga0182016_10230133

Overview

Basic Information

• Taxon OID: 3300014493
• Scaffold ID: Ga0182016_10230133
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1174
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005296	Metagenome	405	Y
F009261	Metagenome	320	Y
F012316	Metagenome	281	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182016_102301331	F012316	N/A	SLGTSGIGKFNTWSKRIDQNSLERALAQIIETANGHRAKGLPKGSPAYCVLRDSADAKIQAFARRWDVDITTIEAQAPALADLHDLCVPDKQVPAGVKLLVRLLGTILFLVLLGAASGLVHAGHDWVLRLIVR*
Ga0182016_102301332	F005296	GGAG	MASWLLWLLPSFEAGFWSALLAGKFRDHGKTRSLLVYGIHSRTHLPLIDERLRKVAGTPTKAQAFLVRHAVAFIRWLANTRAIEHVLLIGLKRSWPKRQTIDSKVSLCL*
Ga0182016_102301333	F009261	AGGAG	MVITPSNSGNLIAGAGLGVFAWSAFLKADRIPWLKNLLTTRRKEMTLDWMDKNKGISLLGLETINLGIHGILSANAVIFALGNTAFNIFMLWAYLPFRKMRARKKYVDTVLKGVV*