Scaffold Ga0182016_10060300

Overview

Basic Information

• Taxon OID: 3300014493
• Scaffold ID: Ga0182016_10060300
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2882
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016695	Metagenome / Metatranscriptome	245	Y
F045493	Metagenome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182016_100603001	F045493	N/A	SMPDVRDDLLRCARFKHVIIAEEGVSDVGDLKTRVSTPIHVLTLSTAKSVPERILVDCRRVQRAKRPGN*
Ga0182016_100603002	F016695	N/A	MHHNQIITVLREHGFAEGRLIANSKSGYFKRHRSHFVVFNAQVCSLGGRLLKQADLDLTLDGEKLTAAARAAGENFYMLYENDPSPFWKPGSIPMARVLRDAVWWTRIHREDEDLFLPMNSGPLKRMRVRLRCSLGRWQNQPAYSVDLRENPAWGSGRNMSGAVVQVLGHPPRGLRPAEKDEVFAAEVSKTRGRPVRPVFYHLVGLLDYVWFSHGAAVPAILYDHTVRRLDSVRFTWHRDSSAIHFRQAGEVVGLFWPCHISAPEVLANARRRLFGRFAKTTAPKGPSAAVTAVGQSSGIRKEL*