Scaffold Ga0182016

Basic Information
Taxon OID	3300014493 Open in IMG/M
Scaffold ID	Ga0182016_10010461 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014493 Open in IMG/M

Scaffold ID

Ga0182016_10010461 Open in IMG/M

Source Dataset Name

Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9068
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (72.73%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

9068

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (72.73%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Stordalen
Coordinates	Lat. (^o)	68.35	Long. (^o)	19.05	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Sweden: Stordalen

Coordinates

Lat. (^o)

68.35

Long. (^o)

19.05

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048424	Metagenome / Metatranscriptome	148	Y
F059437	Metagenome / Metatranscriptome	134	Y
F082044	Metagenome / Metatranscriptome	113	Y
F102028	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182016_1001046111	F059437	N/A	MPIGNRYLQGQPVLPYANVKAYPNTDIFMDLQFVDHTNTPVVPTSIAIEIDDITNSVVLPNCGPITLNASGAVGTAGSPFTYPAFAASMYLQVLASAWQMTFPYIGSQLCQVGMQFTAIDSVTGQPFTSTAVIAIIELCALATVSGLTY*
Ga0182016_100104614	F082044	GAG	MSVTLKLVHEEGIRLRQQAAHKIEHKDKDDKVTHTSVDWRFVKRPASDGKQVEECQQDEDPRRVDNNGRKLQLGTYTVHVTAGMNNLVVERKGKVAPFNFKNGAIRNQVRVQYQKLVDTGRKTKDQKAVHEWKNDGAAKYIPPNTFDGVFVGDGQRAIVDEMPT*
Ga0182016_100104618	F102028	AGGA	MSLGDGENPPGSPKNSWGKWPKIKPESVAPLRDGRPDMYNHMPTRFVTKDEAKARGWKHFWTGEVCVTGHRAARYVANGSICVDCQRVERGQVPVYGKGVPELEEARRRNYTQKNTAPAGPPVPSAGEKNFLAKYAELKDFALAADACGRNESEFLAILSWNETFRNAVNLLEETLGVARTQKVSEHFDWTDDKRRSFLITYANTADMKGALRSVGATNVQFHKELSENGDFQRDFDDAAHIARSVFDHAASAAATKGDARMLGRIAANFFPEKFGENLKVDLNVKQNLSLDQAHAQLTTLLSRFDRQGILAAPAAAADTAIEAEFEVVEPARDDEVDPDPEPTCADPGSDPNSDLVSGSV*
Ga0182016_100104619	F048424	GGAG	MILTPELEEIGKRVRVLRDRVLVKILPYVHPTLATPGIEINKGVVIAVGYGRRQRRKVAFKQEISDGPPVLGPGGKVMQFAKSKLSGKTLYFEDGPETGAIIPMQVKPGDVIEFSFRNITLVDFDRVGFPGIGDLAFVWQKAIYSVDPDESLNECLMWQQSAGYDRKGNFMSGSEDWHRA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0182016_10010461

Overview

Ecosystem & Geography

Associated Families

Sequences