Scaffold Ga0182016_10000138

Overview

Basic Information

• Taxon OID: 3300014493
• Scaffold ID: Ga0182016_10000138
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 84367
• Total Scaffold Genes: 89
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 54 (60.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000482	Metagenome / Metatranscriptome	1089	Y
F000548	Metagenome / Metatranscriptome	1036	Y
F032347	Metagenome / Metatranscriptome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182016_1000013818	F032347	GAGG	LNIVVDFDAENNILRGTLHGPMSGASLLKLYADGTAYLASHPPCRGILDFSDVTDFEVSSEAIRQVAGSPAAFPPGYMRVLVIPQIFIYGLARMFQILGEKTRPELQVVRSLEEAYRLLGVENPEFYPLS*
Ga0182016_1000013846	F000548	AGG	MGKTNADGAGWIGVPVRVVAMTFLFTVLSFAVALLLSILGTVVYSQVKHVAPNLTFAYRHVAFPFAILVGVIVLAVSIWMEIRNYRRGKVLERIEGASFAARR*
Ga0182016_1000013857	F000482	N/A	MQPSRTHLAIAFGSAGLLVLVFLGYLYWLSNQPPVLSRSEERDPLTQMPISITMNPFRDRTIERTANKFIAQMRDGNCRTLLAQWEKDYRKKRADFLCSSEVQHPLISWNLVEWEDAPPLVILHYKGERYSTPAQDSTYKDLFTVTEEKKDEGWTVTKYDSFY*