Scaffold Ga0182016_10000054

Overview

Basic Information

• Taxon OID: 3300014493
• Scaffold ID: Ga0182016_10000054
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 120587
• Total Scaffold Genes: 94
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 64 (68.09%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000439	Metagenome / Metatranscriptome	1137	Y
F052072	Metagenome / Metatranscriptome	143	Y
F062016	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182016_1000005411	F000439	GAGG	MDFQKNNGDGLLTIDAQANSVSAQQVVKAAHEELLQLMRQRAEIMKRIGTVKQTIAGLANLFGDSVLDDDLLELIDRKPNGRQPGFTKACRRVLMDVRRPLGAREVCVELERYAPAILARHKDPLASVTTVLNRLVDYGEARSLSNDRGRRVWEWVSEVEAAENVMTVRRTA*
Ga0182016_1000005480	F062016	GGAG	MKSFYKLATLSLMMSALAAAVFAQDGPQTTLANLTEGQGVIQSSSNPSWDGLSEFVLIPGASLVGPSSTSTALYIGFIGGSEADIGNMVLYEVPRNGSTVLKATKVELGGTTSPSIVLTNTSTCPKQPVSVSNPCIVRLDTVKLALSPLDDYYLVIYFTLDTNNESIVALGQNVEQGALSGFYLYGDQTRVGVKGALPTNENTDQPPFFLAYVTNE*
Ga0182016_1000005481	F052072	AGGAG	MKTIFKFATFTLMMVCLSAYGFSETKPPKAGGENLERGIVGPVSSNVGWAGYSTLGLVSGAGLIPVTSTQTVFYLGFTAGAKVDVSNMTLYTTARGSSTITAVTPVTLGGVSNPSIDLASTSVCPVAEISNFNPCIVKLDATKITLSALSDYYLVVYYTPSDTNNNSVGLTQPSFGQSSLRGSYQSGDDSHISVGGSIPSALSFSGQPFGLMYVMTN*