Basic Information | |
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Taxon OID | 3300014492 Open in IMG/M |
Scaffold ID | Ga0182013_10215904 Open in IMG/M |
Source Dataset Name | Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1139 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Sweden: Stordalen | |||||||
Coordinates | Lat. (o) | 68.35 | Long. (o) | 19.05 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F005296 | Metagenome | 405 | Y |
F009261 | Metagenome | 320 | Y |
F100248 | Metagenome | 102 | N |
Protein ID | Family | RBS | Sequence |
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Ga0182013_102159041 | F005296 | GGAG | MATWLLWLLPSYEAGFWSALLAGKLRNHGKTRELLVYGNHSRTHLPLIDERLRKAAGTPTKSQAFLVRHSAAFIRWLANAHAIEHMLLIGLKRSWPKGQTIDSKISLCL* |
Ga0182013_102159042 | F009261 | AGGAG | MVITPSNSGNLVAGAGLGIFAWSAFLKADKIPWIRKLLTTRRKEMTLDWIDKNKGIRMLGLETINLGIHGILSANAVIFALGNTAFNIFMLWAYLPFRKMRARKKHVDTVLKGVV* |
Ga0182013_102159043 | F100248 | AGGAG | MSKLTILAILSLVFIGVTRLAQFVLSLFVIVFFGFTTFELIRTLRQPAKRQYAE* |
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