Scaffold Ga0182013_10117172

Overview

Basic Information

• Taxon OID: 3300014492
• Scaffold ID: Ga0182013_10117172
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1754
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006594	Metagenome / Metatranscriptome	369	Y
F012405	Metagenome / Metatranscriptome	281	Y
F062993	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182013_101171721	F062993	N/A	PGVFTLRSPHSSRSLYALSQSQVVGDGIRITSQGQAPVKVLKAEVHANAVAPGGTTWGLITFEWPPRTNGPAVVKFAFPSDGAGDVTAVLVL*
Ga0182013_101171722	F006594	GAG	MEPQVEITPEHALHLVRSRMYLKIPLEDTGIQTPSATRIVEGFRARFDNACDVGVWKRLSNAVLEPANRFDAKARRQLRQEAIILGTLALTALGLALYFNLNAIAR*
Ga0182013_101171723	F012405	GAGG	MAKDKDKESLLNRILRRGEDAGLLVSAAALILVEAGYLAWLERLPALPNPAHPAGFLDLPPWYEHPRVEVTLLLTVLGGVIGWAALGVCGLMRNRSDGAVAAMLRATVHKRLKTAIFYAVVVGADLLLTQFLHT*