Scaffold Ga0182013_10073772

Overview

Basic Information

• Taxon OID: 3300014492
• Scaffold ID: Ga0182013_10073772
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2428
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009261	Metagenome	320	Y
F012316	Metagenome	281	Y
F093078	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182013_100737722	F093078	AGGAG	MKLIFGFLLFVAAVAITGGLYLVIRKPAQKKTDLEKLENVCRQIVHRIRQLDDYLARIYTTTLFRMIPSLHEERSTVPERRSSAAEFPHDNVIIPAE*
Ga0182013_100737724	F009261	AGGAG	MVITPSNSGNLVAGAGLGIFAWSAFLKADKIPWLRNLLTTRRKEMTLDWIDKNKGISLLGLETINLGIHGILSANAVIFALGNTAFNIFMLWAYLPFRKMRARRKHFENVLKGVS*
Ga0182013_100737726	F012316	GAGG	MSETTFDEPASTTHPCGKAWGRLRSLGARGISTFNTWRKRMDQNSLERALAQIIETANGHRAKGLPKGSPAYFVLRDKADAKIQAFARRWDVDITTIEAQAPALADLHDLCVPDKQVPAGVKLLVGLLGTILFLVLLGAASGLVHAGHDWVLRLIVR*