Scaffold Ga0182013_10003091

Overview

Basic Information

• Taxon OID: 3300014492
• Scaffold ID: Ga0182013_10003091
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21134
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002289	Metagenome / Metatranscriptome	574	Y
F004753	Metagenome / Metatranscriptome	425	Y
F010341	Metagenome / Metatranscriptome	305	Y
F035732	Metagenome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182013_1000309111	F002289	GGA	MMVNPVVQLDPGVDLQTAIATLIKVAENVEIVRWIELPASVLLFLLVPGDPDSGAVYVLDRKKETWYVVDFEDEQFGGYSVSQLEVLFRDCNFLDLIERPGLWRAGLRWVVMPGTRPETAV*
Ga0182013_1000309114	F035732	GGAGG	MHERVKNYALVICLFVFLFVSIGNGLHLTPGAAFIGALSGTPLVIFAFNRWCDARCRREEARREEPASEIVPLRERP*
Ga0182013_100030912	F010341	AGG	MTDPFTVKPVYNALSQYIGNRSDIGAGKAMDDGVLEPFNPFERKAARPPRRWFVLFSLVAALFFGCFNYFNNLL*
Ga0182013_100030913	F004753	AGG	MDEQTDANEVKPAAPNEVGSDARELIRDWEVLFWAFLLFGLARLAWLYLYRPENKDFHLGLSCGFVFCGALGFLMRWVFSPKRTQ*