Scaffold Ga0182013_10002512

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0182013_10002512

Scaffold Ga0182013_10002512

Overview

Basic Information
Taxon OID	3300014492 Open in IMG/M
Scaffold ID	Ga0182013_10002512 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	23885
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (60.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Stordalen
Coordinates	Lat. (^o)	68.35	Long. (^o)	19.05	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015917	Metagenome / Metatranscriptome	251	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182013_100025124	F015917	AGGAG	MAKSKTVRVGNVTVTQISPKERELLAEKIKQRHDLLRNRYREIHGKIVDWVSYSFGDGSLYVSIRFMDKTDFSFQFSPKILTDSINLSDMSTGNFEMIRRYAKRSDE*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.