Scaffold Ga0182013_10001145

Overview

Basic Information

• Taxon OID: 3300014492
• Scaffold ID: Ga0182013_10001145
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36581
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (58.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000858	Metagenome / Metatranscriptome	858	Y
F004508	Metagenome / Metatranscriptome	435	Y
F012603	Metagenome / Metatranscriptome	279	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182013_1000114510	F000858	GGAG	MSGNPYLFAAYAVTWIIHIAYLGTIVSRYSRLKRDLKKTGGR*
Ga0182013_1000114517	F012603	N/A	MFLFLDPSPVLAQTLLPHEILRETIAGNNSDAASTFIMASPVSLPDSPSTRSLKVVDKKFIITMATLAGAETLRLTTHQLVLVHEFAAGAPWVTSVPSNPRLVGKYAGIYAAELLVAYELKKSHSWLPGDRIVRKLWWAYPAAMVPIHIKNGVRSIRTQAPSCPPQECPSQ*
Ga0182013_1000114526	F004508	AGGA	MFVIMLGAFSAAENEMGIADHYRVSFIQKVRVADTLLPQGNYEIRHVMEGSNHIMVFRQLGTKKPVEVRAKCTLVPLGAKADRDQTVYILNAANERVLQELVFKGDRAKHVFQQQEGEKTADVG*