Scaffold Ga0182013_10000479

Overview

Basic Information

• Taxon OID: 3300014492
• Scaffold ID: Ga0182013_10000479
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 56030
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (74.55%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024662	Metagenome / Metatranscriptome	205	Y
F047790	Metagenome / Metatranscriptome	149	Y
F066084	Metagenome / Metatranscriptome	127	Y
F097724	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182013_1000047911	F024662	GGA	MREFGLMLGALPPVARKALAGALILLDQGARLYPPARGRRFARLDDEVAEAYVRALLARHDAAAEMTQRLKGVVTMCYYDLPEVQREIGYDPGPYIAAVSRRRLQAYGPQIRAGEAAVTAGEAAVTAGPSDPGPGQS*
Ga0182013_1000047915	F066084	AGGAGG	MAGPEAYVLASGGTTLERSREEVLEATRPLPPDEDVVIEELSDDEDRLFLAVILDS*
Ga0182013_1000047917	F097724	GAGG	MVRKALFLLPVFVAVLAASQWRELSRYVKLRQMSSGDGHPEHVPVEGHHSYPTSPGGGAADGTGDFDSGSRGGPQTP*
Ga0182013_1000047935	F047790	GGAG	MSLDDDLAAWAATVRLRDDEAAVIFQRLVRTPAPVPVAKSRLDSSWWRDFNADFAARLIASTRPARRAA*