Scaffold Ga0182013_10000025

Overview

Basic Information

• Taxon OID: 3300014492
• Scaffold ID: Ga0182013_10000025
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 166371
• Total Scaffold Genes: 134
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 88 (65.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000065	Metagenome / Metatranscriptome	2788	Y
F017681	Metagenome / Metatranscriptome	239	Y
F054232	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182013_1000002513	F017681	GGAGG	VSNIEHLYHYRAMHDETVKAKDLTAKQTLAVPCTTCGAAIGEECELNTGAPRTEPHRDRKLEAAEAAEAAEKGISPR*
Ga0182013_1000002515	F000065	N/A	MTDVINPLPRRLRKAPQAPLAYRGATPDSDRARKPALADPIATGEQLNPGDRVEGLGDFGRPTGEFGTVERTNDEDAVVKWDDDGRIRTHQPRLKKISSVPATEPE*
Ga0182013_1000002570	F054232	AGGA	MRRVLLFFGSLATGVLTIVLSLALLVVSLSMYDRYVLGIASDGSIGWDPVSIYGRYWVIGIPLLIFGLGCSAGYWFLRKRLHR*