Scaffold Ga0182014_10019924

Overview

Basic Information

• Taxon OID: 3300014491
• Scaffold ID: Ga0182014_10019924
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5741
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005296	Metagenome	405	Y
F009261	Metagenome	320	Y
F012316	Metagenome	281	Y
F047435	Metagenome	149	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182014_1001992410	F047435	AGGAG	MTKLTLLAVLGLIYLGVLRLAYFFMAVFIILFFGMTTWELIRTFRQPAKHRFAAQ*
Ga0182014_100199246	F012316	AGAAG	MAVSPWLLSLLEGEGNMSTTLIDQPTGPMHRCGKVWEGLRSLGTRGISAVNLWRRHQDQSALEKALARIIETANGHRTKGLPKGAPVYVVLRDKADARIQVFAMKWGVDIAIIKAQAPALADLDSLCVPDKQIPAGLKLLAALLGTILSLVLLGAASGLVHAGHDWVMRFVVR*
Ga0182014_100199247	F005296	GGAG	MAAWLLWFVPSFEAGFWSALIAGKLRGRGKTCELLVYGRPARTCLPLIDERLRKAAGTPTKSQAFAARRIAAVLRWLANTRAMDYAILLGLRRIWPKGRTIRAEVKMCL*
Ga0182014_100199249	F009261	GGAGG	MILTPSNTGNLVAGAGLGIFAWSAFLKADKVPWLKKLMTTRRKELSLDWINRNKGISLLGLEAINLGIHGILSANAVIFALGNTILNIFMLWAFLPFRMARAEKLRIHNMLKGVA*