Scaffold Ga0182014_10017449

Overview

Basic Information

• Taxon OID: 3300014491
• Scaffold ID: Ga0182014_10017449
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6340
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013913	Metagenome	267	Y
F014639	Metagenome	261	Y
F025336	Metagenome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182014_100174497	F013913	AGGAGG	VNLTPSSRSSFIAGIGLWCLLWLSLFKADEIAQAGGFQRWISSQGCLRWIREHKSTSLIGTEVCNYAHTGLGPMGVTFALGGTLTNVIFIYLVLPILDRAKRIGKVLNL*
Ga0182014_100174498	F025336	AGGAGG	MSLLAIIAAAEAVLFTASGAKRNQARRQQVLMGNNLNTVPLVDTYLKRKTAGASRVQVFVASKLAEICRQVVHTRSFDYLLLHVIRTAILKCRFNIQRRVTP*
Ga0182014_100174499	F014639	AGGAG	MSEITQSTQTPASIETGILNRKWKLILFFFAKRAFESKLEGILRAAVGHEGNSLPPGNSQYQLLSTEANLLCIKFADRWELDVDLLRARIPGLAKLAGLSVPPPTKNYARIACFGMIAIPLALFLMGALAGLVNVAFHIVGGR*