Basic Information | |
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Taxon OID | 3300014491 Open in IMG/M |
Scaffold ID | Ga0182014_10007070 Open in IMG/M |
Source Dataset Name | Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 11842 |
Total Scaffold Genes | 17 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (64.71%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Sweden: Stordalen | |||||||
Coordinates | Lat. (o) | 68.35 | Long. (o) | 19.05 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F005296 | Metagenome | 405 | Y |
F009261 | Metagenome | 320 | Y |
F056263 | Metagenome | 137 | N |
F100248 | Metagenome | 102 | N |
Protein ID | Family | RBS | Sequence |
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Ga0182014_1000707012 | F100248 | GGA | MTKLSLVAILSLVFFGVTRVAHFVLSLFIILLFGITIFELIRTFRQLAKRQYAA* |
Ga0182014_1000707013 | F009261 | AGGAGG | MILTPSNTGSAIAGVGVGVFTWGAFLKSDHIPWLKKFMTTRRKEATLIWINKNKGISLLGLETVNFSIHGITSANSVMLALGNTILNIFMLWVFLPFRMIGVTKKHTRSVLKGAS* |
Ga0182014_1000707014 | F005296 | AGGAGG | MPIWLVWFLPVYEAGFWSALIAGKFRNRGKTREMLVYGRPVRTCLPVIDERLRKAAGTPTKSQAFVARWIVAGLRWLANTRAMEYAILLGLRRIWPKGQTISTEVKMCL* |
Ga0182014_1000707015 | F056263 | GAGG | MKKTIIEEAAGPIQCCNKASGGLRALGTRGISTFKAWRQHRDQEALEKALARIIETANGHQAKGMPRGSQVYLALWIKANDAIDHFCEKWHVDPTLIEAEAPALRELKNLTIPDKSLPLGFKLFGSFIGGILFLILIGAASGLVNAGHNWVMQSVAHFIH* |
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