Scaffold Ga0182014_10006154

Overview

Basic Information

• Taxon OID: 3300014491
• Scaffold ID: Ga0182014_10006154
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13043
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026087	Metagenome / Metatranscriptome	199	Y
F070444	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182014_100061541	F070444	AGG	VQWLARYVHSVALIALLLLSLPESLSAATAAHWTVINRPTRLVNGSPVLFRVTTPAPVRALSGNWLGHEIAFSFDARGKVWFALAGVSLETKPGAY
Ga0182014_100061543	F026087	N/A	MQPVTSVEGNKPGNRAGPWFRRRFRRIVLRLFLAALALLGIAYAADYVVFRYRLATNRQPFGSVTVEHYYMVAHKDGKAEIIFDPPVPKTCVHSLFPHAGDPPCWFLIRHAEQRTDL*