Scaffold Ga0182014_10001115

Overview

Basic Information

• Taxon OID: 3300014491
• Scaffold ID: Ga0182014_10001115
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36410
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (55.26%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009138	Metagenome / Metatranscriptome	322	N
F013515	Metagenome / Metatranscriptome	270	N
F016695	Metagenome / Metatranscriptome	245	Y
F035282	Metagenome / Metatranscriptome	172	N
F071179	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182014_1000111513	F071179	N/A	MSTSERLLRAVQFNSITALRNQLGSEQFIEWLITPCHRDGMTPVEALESGLWQEVAELAEDAMSKGVAQF*
Ga0182014_1000111525	F035282	GGAG	MKIVVLLPFILLVRVIAHFDPHLFRYWAVHSMDYWRFWGTTWKGYAIGLAGWAILLGGLYSLVVWLL*
Ga0182014_1000111528	F016695	N/A	MHYNQIIAVLREHGFAEGRLIANSKSGYCKRHRSHFVVFNAQVCNIRGRLLKQADLDLTLDGEKLTQAARVAGENFYVLYENDPSPFWKPGSIPMSRVLRNAVWWTRIHREDEDLFLPMNSGPLKRKQVRLRCSMGRWQNQPAYSVDLWDNPAWGNGRNMSGAVVQVLGHPPQGIKPAEKDDVFTAETSKGRGRPVRPVFYHRVGLLDYVWFSHGAAVPAILYDHIVRPLDSVRFTWHKDSAAIHLRQAGEVVGLFWPCHISAPEVLAHARRRLFRRFAKNPEAVENLR*
Ga0182014_1000111529	F013515	N/A	MCFPRSLLPSSIWRGRRREFAGKPKGMNKQTRKTKLLDDGFMTVPSYPFSARDIFGDLRSRLSVEHRRPMSFERLAKMLGQSKSTTYNWFDIFHHPHVLGFLCLLERLPPAERQSFIEAHCRAYPTLDDPRVAHAPGKTGKLLELLNQKAGLTIITGGTDFSRTFVFTALAHAAGRADGKLLATAGIDLHRSNLFVPVESLIYIDGDLAPDHVRRLTHRIWPRVLTSGATRLFFNRVWSCVPEVRDDLLRCAGFKHVVIAEEGALDVGDLKTKVPTPIHVLTLSTAQSVPEGILVNCRRVQRKTTGKLRFWKKCRPMD*
Ga0182014_1000111530	F009138	GGA	LFRWPIWPAEQKRGWEKPTSLQQYLSTTIPEFMTQNRIFERPDCRRRSLKASLTDVTKTARQWDAVFAMRVHPELLGKYTVPNVADDDEGYYLVGALVQAIDAALEGRIPSRLVSYGKFLAIDFAFLAQRRRTSSEEVLNLRAVLGPCDGSHPFVCVARQDPPF*